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Take into accout a provided remote url when linting all modules #2243

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merged 3 commits into from
Apr 21, 2023

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Thanks to tests failing in #2190 I noticed that when linting a module providing a --git_remote and linting all modules with --all or indicating so by prompt, all modules are linted independent on the remote they come from.
This takes into account the --git_remote param and lints only the modules from that repo.

PR checklist

  • This comment contains a description of changes (with reason)
  • CHANGELOG.md is updated
  • If you've fixed a bug or added code that should be tested, add tests!
  • Documentation in docs is updated

@mirpedrol mirpedrol marked this pull request as ready for review April 21, 2023 09:03
@mirpedrol mirpedrol requested a review from mashehu April 21, 2023 09:10
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codecov bot commented Apr 21, 2023

Codecov Report

Merging #2243 (2cdb158) into dev (8c9cc54) will decrease coverage by 0.05%.
The diff coverage is 100.00%.

@@            Coverage Diff             @@
##              dev    #2243      +/-   ##
==========================================
- Coverage   73.12%   73.08%   -0.05%     
==========================================
  Files          77       77              
  Lines        8342     8344       +2     
==========================================
- Hits         6100     6098       -2     
- Misses       2242     2246       +4     
Impacted Files Coverage Δ
nf_core/modules/lint/__init__.py 83.41% <100.00%> (+0.17%) ⬆️

... and 1 file with indirect coverage changes

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@mirpedrol mirpedrol merged commit b124e08 into nf-core:dev Apr 21, 2023
@mirpedrol mirpedrol deleted the remote-url-when-linting-all branch April 21, 2023 11:12
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2 participants